Posts Tagged ‘ natural selection ’

Backing Up Evolution


I’ve said it before and no doubt I’ll say it again but we know science works because it makes predictions that we can then measure against the universe and determine if the models we have created to describe it are accurate or not. One of the more successful models is the theory of evolution by natural selection. A criticism levelled against the theory of evolution by detractors is the claim that new information can not be introduced into the system, only taken away. This is actually false but lets consider how we might tackle this question scientifically

First, the underlying assumption here isn’t unreasonable, let’s explore it. The accepted mechanism of introducing change in an organism, change that natural selection can then act upon, is mutation. Mutations involve a mistake in the copying of an organism’s DNA, this might consist of a change in a single base of a gene (an insertion of an extra base, deletion of an existing base or swapping one base for another) or it might involve large stretches of DNA. The basic principle that is relevant here is the same, a change is made to the blueprints of life in our cells.

As you might expect there are many more ways of being wrong than there are of being right, any random change is more likely to introduce a defect in the complicated machinery of life than it is to create an improvement (bearing in mind that “improvement” is a value judgement that really cannot be applied here but don’t focus on the wrong part of the story). So on the surface it would seem that random change is very definitely a bad thing, mutations would likely lead to loss of gene function, and by extension, loss of information and specifically death of the individual.

How might evolution get around such a problem? One solution would be to make copies of critical genes, this way is one copy is damaged through mutation the other can still function and produce a viable organism. The “spare” gene would then be free to mutate and the resulting gene may be selected for or against by natural selection (or human breeders).

If you have been reading closely you will have picked up on our prediction, the genomes of organisms should contain copies of various genes that allow mutations to occur without harming the individual that accumulates them. It turns out this is exactly what we find.  A recent study found a significant amount of redundancy in the genome of Zebrafish which allows mutations to occur in genes critical to development without lethal consequences to the fish.

The researchers intentionally gave mutagens to populations of Zebrafish and looked for changes in fish morphology indicative of mutations. In particular they created a mutation that lead to the loss of most of the fish’s scales, similar to that of Mirror Carp. The mutation was traced to a gene critical to normal development, further investigation revealed that the gene existed as a redundant pair, only one of which being required for normal development.

It is tempting to talk about this phenomenon in terms of intention, the gene was duplicated so that it could mutate and provide raw material for evolution. This is a mistake however, evolution can not move towards any putative desired future state. the genes that are duplicated in this way will be random and the mutations that affect the genes will be equally random, there are likely many genes in the Zebrafish that are not duplicated and would cause death to the individual if they were to change. This does not detract from the fact that a proposed mechanism for introducing new information into an organisms genome has proven correct.

Science is Awesome.

Thermodynamics Vs Evolution: The Grudge Match


The law that entropy always increases holds, I think, the supreme position among the laws of Nature. If someone points out to you that your pet theory of the universe is in disagreement with Maxwell’s equations — then so much the worse for Maxwell’s equations. If it is found to be contradicted by observation — well, these experimentalists do bungle things sometimes. But if your theory is found to be against the second law of thermodynamics I can give you no hope; there is nothing for it but to collapse in deepest humiliation.” — Sir Arthur Stanley Eddington, The Nature of the Physical World (1927)

Read more

Darwin Day


“Man with all his noble qualities, with sympathy which feels for the most debased, with benevolence which extends not only to other men but to the humblest living creature, with his god-like intellect which has penetrated into the movements and constitution of the solar system—with all these exalted powers—Man still bears in his bodily frame the indelible stamp of his lowly origin.”
The Descent of Man, 1871

I was doing so well, you think it would be simple just daily posts for 12 days. Then I drop the ball on the last day and the only one that really mattered. Oh well, it’s still the twelfth somewhere. For this last post in the series I just wanted to briefly look at the writings of Darwin and say you should read them. So far I have not read anything of Darwin’s but I plan to remedy that just as soon as I finish the current book on my list, Daniel Dennett‘s “Breaking the Spell: Religion as a natural phenomenon” which is not a bad read itself. But anyway, in addition to his most famous works “On the Origin of Species” and “The Descent of Man” Darwin also wrote a number of books on a range of topics. Coral reefs, geology, carnivorous plants, worms, volcanic islands as well as a narrative of his time on the “Beagle” and an autobiography are all products of of his pen. Numerous letters have also been collected and published that detail his social contacts and the development of his thinking over time. The website The complete work of Charles Darwin online has a dizzying number of documents boasting 20000 of Darwin’s private papers.

Here’s a quote about Darwins theory:
“[When the theory of creation by evolution] was
first advanced it was met by a storm of dogmatic abuse.
It was ridiculed, pooh-poohed, abused, called the
‘dirt theory,’ and scarcely given a hearing.
Now the tables are completely turned, so that the man who
today opposes it is treated very much the same way as if he
denied the revolution of the earth around the sun.”
These words, rather than being written recently, appeared in the publication “Catholic World”, February, 1882 which contained an article, Evolution, by W.R. Thompson. (reference thanks to The “Popular Press” Responds to Charles Darwin, The Origin of Species and His Other Works Sidney Horenstein published in Evolution: Education and Outreach)

On a geekier note, the Perth Mint has a Darwin Commemorative coin to celebrate the 200 years since Darwin’s birth. Made of 1 ounce of 99.9% pure silver it’s the must have item this year. Be the first Geek on your block to get one. Mine of course arrived several days ago.

Look, it's even in colour!
Look, it’s even in colour!

So, follow my example and read “The Origin of Species” and get a coin to remember your experience by.

Evolution Everywhere


Today I’ve decided to send you away again.

First up is one of the magazine specials that we’ll likely see dozens of this year that centre on Darwin and evolution. It’s from BBC’s Focus magazine and covers topics such as whether humans are still evolving, What Darwin didn’t know, Evolution in action and how to argue with a creationist.

So Check that out, looks like an entertaining read.

Second up is a series of videos featuring one of the greatest popularizers of evolution since Darin himself (Origin of Species was a “best seller“). As well as one of the most controversial and inflammatory, Richard Dawkins. Whatever you think of this now public figure any discussion featuring him is instantly more interesting and his descriptions of evolution are carefully tuned to be understandable by a wide audience without spiraling into condescension. Produced for the National Geographic channel each video is high quality and only a few minutes long. Topic covered in the videos are the importance of Darwin, Fossils & Darwin, Why Darwin Was Right, Creationism then Dawkins’ views on God & the Universe that while in my opinion not strictly relevant to the scientific endeavour of evolution still is one of the first things that many people leap to when considering these ideas.

Again, head over there and consider yourself edified.

Yesterday: Evolutionary “Gems”

Evolutionary “Gems”


As a follow up to yesterday’s post on Transitional Fossils I thought I would highlight another resource put together by the journal “Nature” that brings together 15 short easily read articles on evolutionary evidences along with references and additional resources. Given the name “15 Evolutionary Gems” they have set the stage to showcase some insteresting and foundational topics and they do indeed deliver. A rundown of the contents is as tantalising as I would expect from such a document as you can see below:

Gems from the fossil record
1 Land-living ancestors of whales
2 From water to land
3 The origin of feathers
4 The evolutionary history of teeth
5 The origin of the vertebrate skeleton
Gems from habitats
6 Natural selection in speciation
7 Natural selection in lizards
8 A case of co-evolution
9 Differential dispersal in wild birds
10 Selective survival in wild guppies
11 Evolutionary history matters
Gems from molecular processes
12 Darwin’s Galapagos finches
13 Microevolution meets macroevolution
14 Toxin resistance in snakes and clams
15 Variation versus stability

So from the transition of animals from water to land to the evolution of feathers, the basis of new species to the introduction of sudden changes in animal body plans and everything in between they have it covered. Whether you are just interested in a quick read of a springboard to in depth study this is a great resource. Each topic is covered in less than a single page with usually only two to three paragraphs of text. As such it is a very easy read and certainly does not bludgeon you with overly technical language.

Give it a try, I think you’ll be pleasently surprised.

darwin

Yesterday: Transitional Fossils    Tomorrow: Evolution Everywhere

Kin Selection


Do you spend time with your family? Good. Because a man that doesn’t spend time with his family can never be a real man.
-Don Corleone (The Godfather)

It’s all about family, kin selection is the explanation given for behavior that decreases the ability of an individual to have offspring while increasing that of the individual’s family. The most extreme examples of this is found in eusocial insect species such as ants and bees where entire segments of the population give up their “reproductive rights” in order to tend to those who do the reproducing for them.

Of course the ants don’t get together and decide who gets to breed and who doesn’t, that decision is made by the interaction between their genes and the environment they are exposed to. The point is those genes can be selected for under the right circumstances. In species like bees where the colony is mostly composed of the progeny of a single queen the population are essentially all siblings each sharing a significant amount of their genome. In this case they are more closely related to each other than they would be to their own offspring whom would only share 50% of their genes. From the point of view of continuing the genetic line therefore their efforts are better spent raising more siblings than going off on their own to have children outside the colony.

For other animals the genetic payoff isn’t as high but the same principles still apply, why do some animals invest time helping to rear the young of brothers and sisters or children? Because it serves their genetic interests to do so. There is an hypothesis that male homosexuality in humans is this sort of kin selection trait. There is evidence that the genes that confer homosexuality on males increase fertility when they are in a female host, and having homosexual relatives may (there isn’t much evidence for this) increase the pool of helpers mothers can draw on to raise their young. Speculative but fascinating.

So in light of kin selection it becomes less mysterious to explain concepts like altruism, fundamentally altruism means performing actions that benefit another individual at a cost to yourself. If in the environment your genes evolved the individuals you are most likely to meet are your own family members then it is not really a cost to your genetic line to help them. So it makes sense that even though the human population of the Earth has reached the point were you are much more likely to interact with complete strangers on a day to day basis we embody behaviours that compel us to act compassionately towards those around us, that’s the way we evolved and I wouldn’t have it any other way. (Of course I would say that, I’m programmed to)

orangatan

Yesterday: Sexual Selection Tomorrow: Gene Eye View

Sexual selection


As we saw in the entry on Natural Selection the environment of an organism can include other species. It also includes other individuals in the organism’s own species, this is where the concepts of sexual and kin selection can fit in.

Put simply Sexual selection is about ladies choice, in many species the males compete for mates but it is the ladies who have the pick of the winners. In nature there are examples of extreme behavior, ostentatious displays an over developed physical attributes, as there are no free lunches in the natural world what pays for these? The answer has been posited that they increase reproductive fitness not directly by allowing faster running, better hunting or other obvious means but but making the individual more attractive to mates. In fact these characteristics might even become harmful by making the individual an easier target for predators.

Ideally the characteristic signals genetic fitness which is expressed by immunity to disease and parasites and ability to acquire food and avoid predators. Bright plumage would be metabolically costly and make predator avoidance more difficult so only a healthy individual can afford the up keep, one that is susceptible to illness would have difficulty and so show that it was inferior. It may be that some sexual selection is a chance preference in females that spirals out of control. If a female happens to prefer longer than average tails in her mates then those males who have long tails will mate and pass on those genes but, significantly, the female will also pass on the preference for long tails. In this way a trait can rapidly change in a population. It may then become a cost to the male that only healthy males can afford and so becomes a de facto indicator of reproductive fitness. In other words the female did not  choose the characteristic because it indicated a healthy mate.

Long-Tailed Widow bird

Long-Tailed Widow bird

In birds this process can be seen to be taken to ridiculous extremes as the aptly named Long-Tailed Widow bird clearly shows. But there is an interesting hypothesis that the human brain itself is a sexually selected characteristic. Instead of developing “higher” intelligence in response to a changing environment or as a survival trait our capacious craniums may have simply made us sexier. It was our ability to shoot off a witty one liner that was the real target of selection and our increased problem solving just came along for the ride. While this may seem far fetched experiments with fruit flies suggests that under normal circumstances greater intelligence is more trouble than it’s worth this combined with the observation that human like intelligence is not replicated in other species, even among our close relatives, means an explanation like this might be closer to the truth than we’d care to admit.

Yesterday: Natural Selection Tomorrow: Kin Selection

Natural Selection


Natural Selection is a simple yet very powerful idea,  the concept that the blind forces of nature can act in place of a purposeful breeder to bring about change in a species leads to some profound conclusions. At the same time it is also one of the most misunderstood and reviled theories in science today.

What is Natural Selection?

Natural Selection is an explanation of the variety of life that we see all around us that is modeled from artificial selection performed by human breeders of animals and crops. One of the most easily grasped examples of this is dog breeders. Over the last several thousand years that canines have been domesticated we have molded them from a few varieties of wolf into the almost dizzying number of breeds we have today. The ancestors of each breed were selected for particular traits that were useful or otherwise desirable to the breeders of the time. The end result was an animal that in some cases bears only a passing resemblance to the original stock.

Wolf vs Bichon Frise

Wolf vs Bichon Frise

American Fantail, Romanian Naked Neck

Bruner Pouter, American Fantail, Romanian Naked Neck Pigeons

Where Natural Selection differs is that it posits that the role of intelligent breeder can be replaced by unintelligent natural forces. In this case the qualities selected for are not matched against some future ideal but what is best suited for the existing environment. In other words the forces influencing evolution can not select for the eventual creation of a particular body plan or anatomical structure, there is no room for foresight in this system, each change must be adaptive in the environment that the organism finds itself.

It is now accepted that whales and dolphins evolved from land dwelling animals, natural selection did not decide to turn them into sea faring creatures and induce the changes necessary, each intermediate step had to suit the animal’s life style at the time and make it better able to compete with it’s rivals.

Whale evolution

Whale evolution; Source: PBS - WGBH Boston "Evolution" Project

The unintelligent natural forces I mentioned above can be climate, terrain or other organisms. In the later case one situation that can result is a sort of “arms race” where a change in one organism influences a change in another which in turn feeds back to the first. Consider a predator/prey relationship. If the prey organism by chance starts down a course of running speed as the means of avoiding becoming dinner then the slower predators will tend to eat less often than their faster compatriots. They will then tend to die more frequently and have fewer offspring. In this way the genes for faster running speed will spread through the population and become dominant in the predators. In turn as the predators get faster the slower prey will succumb to them more often and leave the responsibility of continuing the species to the sprinters among the prey population. And so on. This will presumably continue until some sort of fundamental limit is reached.

There is also an intuitive notion that evolution is a sort of ladder whereby bacteria and other simple organisms are on the bottom and are “primative” with fish coming after them, mammals after fish and Humans at the top reresenting the pinnacle of evolution. Tempting as it is however this is absolute nonsense, there is no steady march toward some idealised perfection in the progression from “simpler” organisms to “advanced” organisms. Each animal or plant or single celled organism is as evolved as any other, each as suited to it’s environment as it needs to be to survive.

Yesterday: Origins                                  Tomorrow: Sexual Selection

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