Posts Tagged ‘ selection ’

Backing Up Evolution


I’ve said it before and no doubt I’ll say it again but we know science works because it makes predictions that we can then measure against the universe and determine if the models we have created to describe it are accurate or not. One of the more successful models is the theory of evolution by natural selection. A criticism levelled against the theory of evolution by detractors is the claim that new information can not be introduced into the system, only taken away. This is actually false but lets consider how we might tackle this question scientifically

First, the underlying assumption here isn’t unreasonable, let’s explore it. The accepted mechanism of introducing change in an organism, change that natural selection can then act upon, is mutation. Mutations involve a mistake in the copying of an organism’s DNA, this might consist of a change in a single base of a gene (an insertion of an extra base, deletion of an existing base or swapping one base for another) or it might involve large stretches of DNA. The basic principle that is relevant here is the same, a change is made to the blueprints of life in our cells.

As you might expect there are many more ways of being wrong than there are of being right, any random change is more likely to introduce a defect in the complicated machinery of life than it is to create an improvement (bearing in mind that “improvement” is a value judgement that really cannot be applied here but don’t focus on the wrong part of the story). So on the surface it would seem that random change is very definitely a bad thing, mutations would likely lead to loss of gene function, and by extension, loss of information and specifically death of the individual.

How might evolution get around such a problem? One solution would be to make copies of critical genes, this way is one copy is damaged through mutation the other can still function and produce a viable organism. The “spare” gene would then be free to mutate and the resulting gene may be selected for or against by natural selection (or human breeders).

If you have been reading closely you will have picked up on our prediction, the genomes of organisms should contain copies of various genes that allow mutations to occur without harming the individual that accumulates them. It turns out this is exactly what we find.  A recent study found a significant amount of redundancy in the genome of Zebrafish which allows mutations to occur in genes critical to development without lethal consequences to the fish.

The researchers intentionally gave mutagens to populations of Zebrafish and looked for changes in fish morphology indicative of mutations. In particular they created a mutation that lead to the loss of most of the fish’s scales, similar to that of Mirror Carp. The mutation was traced to a gene critical to normal development, further investigation revealed that the gene existed as a redundant pair, only one of which being required for normal development.

It is tempting to talk about this phenomenon in terms of intention, the gene was duplicated so that it could mutate and provide raw material for evolution. This is a mistake however, evolution can not move towards any putative desired future state. the genes that are duplicated in this way will be random and the mutations that affect the genes will be equally random, there are likely many genes in the Zebrafish that are not duplicated and would cause death to the individual if they were to change. This does not detract from the fact that a proposed mechanism for introducing new information into an organisms genome has proven correct.

Science is Awesome.

Designing Babies, like Designing Women only smaller.


“Keep in mind this child is still you, simply the best of you. You could conceive naturally a thousand times and never get such a result.”
- Geneticist, Gattaca

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Gene Eye View


The gene centered view of evolutionary change is a useful way to visualize how the processes work and to come up with explanations of why things happen the way they do. I have already mentioned concepts like genetic fitness, genetic lines and goals of an individual and this is where those concepts are grounded. This way of considering things was not originally put forward by Richard Dawkins but he certainly popularized it in 1976 with his book The Selfish Gene.

Gene

Gene

The usefulness of this method becomes apparent when you consider that we are use to thinking of species as individuals, discrete in time and space that act upon the world and are in turn themselves acted upon. But evolution doesn’t happen on the scale of individuals, a particular animal does not evolve the population does, and what produces this change in population characteristics? alterations in the genes. If we reverse our point of view and consider the genes as the primary actors in the evolution games things start to make more sense.

Genes are the true replicators in biological systems, while we may consider reproduction to be about continuing the legacy of an individual into the future in actuality it is the genes that are really being propagated. In addition it is the genes that change over time, not individuals even though in conversation it is useful short hand to refer to, say rabbits, evolving over eons it is really the genes and gene frequencies in the population that we are  discussing.

Given that it is the genes that evolution is really concerned with we can start to put into context the concepts that we have been talking about up until now. In other words when we talk about behaviours or physical characteristics benefiting an individual what we mean is that it helps the individual’s genes survive and replicate and eventually spread through the species. More specifically the gene for that trait is selected by the environment of the individual to continue into the next generation.

In this way when a mutation alters the expression characteristics of a gene (eg making brown eyes blue for instance) it introduces variation in the population of genes and this new variant must compete against the other versions (alleles) in order to continue to exist (be passed on to the next generation). So when we consider how an adaption aids an individual we also need to think in terms of what activity is best for the genes because that is what will be maximized and optimized by nature, that’s just the way it works.

Raphael from TMNT

Raphael from TMNT

Yesterday: Kin Selection Tomorrow: Molecular Evidence

Natural Selection


Natural Selection is a simple yet very powerful idea,  the concept that the blind forces of nature can act in place of a purposeful breeder to bring about change in a species leads to some profound conclusions. At the same time it is also one of the most misunderstood and reviled theories in science today.

What is Natural Selection?

Natural Selection is an explanation of the variety of life that we see all around us that is modeled from artificial selection performed by human breeders of animals and crops. One of the most easily grasped examples of this is dog breeders. Over the last several thousand years that canines have been domesticated we have molded them from a few varieties of wolf into the almost dizzying number of breeds we have today. The ancestors of each breed were selected for particular traits that were useful or otherwise desirable to the breeders of the time. The end result was an animal that in some cases bears only a passing resemblance to the original stock.

Wolf vs Bichon Frise

Wolf vs Bichon Frise

American Fantail, Romanian Naked Neck

Bruner Pouter, American Fantail, Romanian Naked Neck Pigeons

Where Natural Selection differs is that it posits that the role of intelligent breeder can be replaced by unintelligent natural forces. In this case the qualities selected for are not matched against some future ideal but what is best suited for the existing environment. In other words the forces influencing evolution can not select for the eventual creation of a particular body plan or anatomical structure, there is no room for foresight in this system, each change must be adaptive in the environment that the organism finds itself.

It is now accepted that whales and dolphins evolved from land dwelling animals, natural selection did not decide to turn them into sea faring creatures and induce the changes necessary, each intermediate step had to suit the animal’s life style at the time and make it better able to compete with it’s rivals.

Whale evolution

Whale evolution; Source: PBS - WGBH Boston "Evolution" Project

The unintelligent natural forces I mentioned above can be climate, terrain or other organisms. In the later case one situation that can result is a sort of “arms race” where a change in one organism influences a change in another which in turn feeds back to the first. Consider a predator/prey relationship. If the prey organism by chance starts down a course of running speed as the means of avoiding becoming dinner then the slower predators will tend to eat less often than their faster compatriots. They will then tend to die more frequently and have fewer offspring. In this way the genes for faster running speed will spread through the population and become dominant in the predators. In turn as the predators get faster the slower prey will succumb to them more often and leave the responsibility of continuing the species to the sprinters among the prey population. And so on. This will presumably continue until some sort of fundamental limit is reached.

There is also an intuitive notion that evolution is a sort of ladder whereby bacteria and other simple organisms are on the bottom and are “primative” with fish coming after them, mammals after fish and Humans at the top reresenting the pinnacle of evolution. Tempting as it is however this is absolute nonsense, there is no steady march toward some idealised perfection in the progression from “simpler” organisms to “advanced” organisms. Each animal or plant or single celled organism is as evolved as any other, each as suited to it’s environment as it needs to be to survive.

Yesterday: Origins                                  Tomorrow: Sexual Selection

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